IL_4WOI_335

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_335 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1089

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4WOI|1|DA|G|774
4WOI|1|DA|G|775
4WOI|1|DA|G|776
4WOI|1|DA|A|777
4WOI|1|DA|G|778
*
4WOI|1|DA|U|804
4WOI|1|DA|C|805

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CC

50S ribosomal protein L2

Chain DK

30S ribosomal protein S11