IL_4WOI_337

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_337 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0854

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4WOI|1|DA|G|887
4WOI|1|DA|G|888
4WOI|1|DA|A|889
4WOI|1|DA|G|890
4WOI|1|DA|U|891
4WOI|1|DA|A|892
4WOI|1|DA|C|893
4WOI|1|DA|G|894
*
4WOI|1|DA|U|905
4WOI|1|DA|A|906
4WOI|1|DA|A|907
4WOI|1|DA|A|908
4WOI|1|DA|A|909
4WOI|1|DA|C|910

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12