IL_4WOI_346

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

4WOI|1|DA|C|1200, 4WOI|1|DA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_346 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0995

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4WOI|1|DA|G|1057
4WOI|1|DA|G|1058
*
4WOI|1|DA|U|1199
4WOI|1|DA|C|1200
4WOI|1|DA|A|1201
4WOI|1|DA|U|1202
4WOI|1|DA|C|1203

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14