IL_4WOI_358

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_358 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1011

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|DA|G|1401
4WOI|1|DA|C|1402
4WOI|1|DA|C|1403
4WOI|1|DA|C|1404
*
4WOI|1|DA|G|1497
4WOI|1|DA|U|1498
4WOI|1|DA|A|1499
4WOI|1|DA|A|1500
4WOI|1|DA|C|1501

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DV

Messenger RNA

Chain DW

Transfer RNA; tRNA