IL_4WOI_379

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_379 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2552

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|CA|U|1474
4WOI|1|CA|G|1475
4WOI|1|CA|U|1476
4WOI|1|CA|A|1477
4WOI|1|CA|G|1478
*
4WOI|1|CA|U|1513
4WOI|1|CA|G|1514
4WOI|1|CA|A|1515
4WOI|1|CA|G|1516
4WOI|1|CA|G|1517

Current chains

Chain CA

23S ribosomal RNA

Nearby chains