IL_4WOI_380

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_380 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.306

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WOI|1|CA|C|1526
4WOI|1|CA|G|1527
4WOI|1|CA|A|1528
4WOI|1|CA|G|1529
4WOI|1|CA|G|1530
*
4WOI|1|CA|C|1541
4WOI|1|CA|U|1542
4WOI|1|CA|G|1543
4WOI|1|CA|A|1544
4WOI|1|CA|A|1545
4WOI|1|CA|G|1546

Current chains

Chain CA

23S ribosomal RNA

Nearby chains