IL_4WOI_392

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

4WOI|1|AA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_392 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.21

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4WOI|1|AA|G|1124
4WOI|1|AA|U|1125
4WOI|1|AA|U|1126
4WOI|1|AA|G|1127
4WOI|1|AA|C|1128
*
4WOI|1|AA|G|1144
4WOI|1|AA|A|1145
4WOI|1|AA|A|1146
4WOI|1|AA|C|1147
4WOI|1|AA|U|1148
4WOI|1|AA|C|1149

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10