IL_4WPO_017

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WPO|1|AA|G|848, 4WPO|1|AA|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0409

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WPO|1|AA|G|721
4WPO|1|AA|A|722
4WPO|1|AA|A|723
4WPO|1|AA|A|724
4WPO|1|AA|C|725
*
4WPO|1|AA|G|846
4WPO|1|AA|A|847
4WPO|1|AA|G|848
4WPO|1|AA|A|849
4WPO|1|AA|U|850
4WPO|1|AA|A|851
4WPO|1|AA|G|852
4WPO|1|AA|C|853

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AP

50S ribosomal protein L15