IL_4WPO_038
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4WPO|1|AA|U|1072, 4WPO|1|AA|A|1173, 4WPO|1|AA|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WPO_038 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.042
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4WPO|1|AA|G|1070
4WPO|1|AA|G|1071
4WPO|1|AA|U|1072
4WPO|1|AA|A|1073
4WPO|1|AA|A|1074
4WPO|1|AA|A|1075
4WPO|1|AA|G|1076
*
4WPO|1|AA|C|1170
4WPO|1|AA|G|1171
4WPO|1|AA|A|1172
4WPO|1|AA|A|1173
4WPO|1|AA|A|1174
4WPO|1|AA|A|1175
4WPO|1|AA|U|1176
4WPO|1|AA|G|1177
4WPO|1|AA|A|1178
4WPO|1|AA|U|1179
4WPO|1|AA|C|1180
4WPO|1|AA|G|1181
4WPO|1|AA|G|1182
4WPO|1|AA|G|1183
4WPO|1|AA|G|1184
4WPO|1|AA|C|1185
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A9
- 50S ribosomal protein L36
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AE
- 50S ribosomal protein L3
- Chain AN
- 50S ribosomal protein L13
- Chain AQ
- 50S ribosomal protein L16
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