IL_4WPO_042

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4WPO|1|AA|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_042 not in the Motif Atlas

Geometric match to IL_5J7L_285

Geometric discrepancy: 0.1589

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4WPO|1|AA|G|1105
4WPO|1|AA|U|1106
4WPO|1|AA|U|1107
4WPO|1|AA|G|1108
*
4WPO|1|AA|C|1122
4WPO|1|AA|A|1123
4WPO|1|AA|U|1124
4WPO|1|AA|C|1125

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L11

Chain BZ

50S ribosomal protein L9,Elongation factor G