3D structure

PDB id
4WPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4WPO|1|AA|A|1960, 4WPO|1|AA|U|1966, 4WPO|1|AA|U|1985
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WPO_077 not in the Motif Atlas
Geometric match to IL_4WF9_077
Geometric discrepancy: 0.1074
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

4WPO|1|AA|C|1956
4WPO|1|AA|G|1957
4WPO|1|AA|A|1958
4WPO|1|AA|A|1959
4WPO|1|AA|A|1960
4WPO|1|AA|U|1961
4WPO|1|AA|U|1962
4WPO|1|AA|C|1963
4WPO|1|AA|C|1964
4WPO|1|AA|U|1965
4WPO|1|AA|U|1966
4WPO|1|AA|G|1967
*
4WPO|1|AA|C|1983
4WPO|1|AA|C|1984
4WPO|1|AA|U|1985
4WPO|1|AA|G|1986

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain AD
50S ribosomal protein L2
Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain BW
Transfer RNA; tRNA
Chain BX
Transfer RNA; tRNA

Coloring options:


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