IL_4WPO_077
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4WPO|1|AA|A|1960, 4WPO|1|AA|U|1966, 4WPO|1|AA|U|1985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WPO_077 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1074
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
4WPO|1|AA|C|1956
4WPO|1|AA|G|1957
4WPO|1|AA|A|1958
4WPO|1|AA|A|1959
4WPO|1|AA|A|1960
4WPO|1|AA|U|1961
4WPO|1|AA|U|1962
4WPO|1|AA|C|1963
4WPO|1|AA|C|1964
4WPO|1|AA|U|1965
4WPO|1|AA|U|1966
4WPO|1|AA|G|1967
*
4WPO|1|AA|C|1983
4WPO|1|AA|C|1984
4WPO|1|AA|U|1985
4WPO|1|AA|G|1986
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BW
- Transfer RNA; tRNA
- Chain BX
- Transfer RNA; tRNA
Coloring options: