IL_4WPO_085

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_085 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2463

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|G|2132
4WPO|1|AA|C|2133
4WPO|1|AA|G|2134
4WPO|1|AA|U|2135
4WPO|1|AA|A|2136
4WPO|1|AA|G|2137
4WPO|1|AA|G|2138
4WPO|1|AA|A|2139
4WPO|1|AA|U|2140
4WPO|1|AA|A|2141
4WPO|1|AA|G|2142
*
4WPO|1|AA|C|2200
4WPO|1|AA|C|2201

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BY

Transfer RNA; tRNA