IL_4WPO_086

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_086 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3196

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4WPO|1|AA|G|2146
4WPO|1|AA|G|2147
4WPO|1|AA|A|2148
4WPO|1|AA|G|2149
*
4WPO|1|AA|C|2183
4WPO|1|AA|G|2184
4WPO|1|AA|C|2185
4WPO|1|AA|C|2186
4WPO|1|AA|G|2187
4WPO|1|AA|G|2188
4WPO|1|AA|U|2189
4WPO|1|AA|G|2190
4WPO|1|AA|A|2191
4WPO|1|AA|A|2192
4WPO|1|AA|A|2193
4WPO|1|AA|U|2194
4WPO|1|AA|A|2195
4WPO|1|AA|C|2196

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BY

Transfer RNA; tRNA