IL_4WPO_096

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_096 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.049

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WPO|1|AA|C|2478
4WPO|1|AA|C|2479
4WPO|1|AA|G|2480
4WPO|1|AA|A|2481
4WPO|1|AA|G|2482
*
4WPO|1|AA|C|2492
4WPO|1|AA|G|2493
4WPO|1|AA|G|2494
4WPO|1|AA|C|2495
4WPO|1|AA|G|2496

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AQ

50S ribosomal protein L16

Chain BW

Transfer RNA; tRNA