IL_4WPO_105

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4WPO|1|AA|U|2701, 4WPO|1|AA|C|2702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_105 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0483

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4WPO|1|AA|U|2699
4WPO|1|AA|U|2700
4WPO|1|AA|U|2701
4WPO|1|AA|C|2702
4WPO|1|AA|C|2703
*
4WPO|1|AA|G|2731
4WPO|1|AA|G|2732
4WPO|1|AA|U|2733
4WPO|1|AA|A|2734
4WPO|1|AA|G|2735

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L17

Chain AT

50S ribosomal protein L19