3D structure

PDB id
4WPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGAC*GG
Length
6 nucleotides
Bulged bases
4WPO|1|BA|G|129|||A, 4WPO|1|BA|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WPO_122 not in the Motif Atlas
Homologous match to IL_4LFB_007
Geometric discrepancy: 0.1157
The information below is about IL_4LFB_007
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_75289.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

4WPO|1|BA|U|129
4WPO|1|BA|G|129|||A
4WPO|1|BA|A|130
4WPO|1|BA|C|131
*
4WPO|1|BA|G|231
4WPO|1|BA|G|232

Current chains

Chain BA
16S Ribosomal RNA

Nearby chains

Chain BP
30S ribosomal protein S16
Chain BQ
30S ribosomal protein S17
Chain BT
30S ribosomal protein S20

Coloring options:


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