IL_4WPO_192

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WPO|1|CA|U|504, 4WPO|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_192 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0472

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WPO|1|CA|G|481
4WPO|1|CA|A|482
4WPO|1|CA|A|483
4WPO|1|CA|C|484
*
4WPO|1|CA|G|496
4WPO|1|CA|A|497
4WPO|1|CA|G|498
4WPO|1|CA|U|499
4WPO|1|CA|G|500
4WPO|1|CA|A|501
4WPO|1|CA|A|502
4WPO|1|CA|A|503
4WPO|1|CA|U|504
4WPO|1|CA|A|505
4WPO|1|CA|G|506
4WPO|1|CA|A|507
4WPO|1|CA|G|508
4WPO|1|CA|C|509

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24