IL_4WPO_196

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WPO|1|CA|G|801, 4WPO|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_196 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0478

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WPO|1|CA|G|674
4WPO|1|CA|A|675
4WPO|1|CA|A|676
4WPO|1|CA|A|677
4WPO|1|CA|C|678
*
4WPO|1|CA|G|799
4WPO|1|CA|A|800
4WPO|1|CA|G|801
4WPO|1|CA|A|802
4WPO|1|CA|U|803
4WPO|1|CA|A|804
4WPO|1|CA|G|805
4WPO|1|CA|C|806

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CP

50S ribosomal protein L15