IL_4WPO_246

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4WPO|1|CA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_246 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0591

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4WPO|1|CA|A|1669
4WPO|1|CA|C|1670
4WPO|1|CA|U|1671
4WPO|1|CA|C|1672
4WPO|1|CA|U|1673
4WPO|1|CA|G|1674
*
4WPO|1|CA|C|1990
4WPO|1|CA|U|1991
4WPO|1|CA|G|1992
4WPO|1|CA|U|1993

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CO

50S ribosomal protein L14