IL_4WPO_264

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_264 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3886

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4WPO|1|CA|G|2110
4WPO|1|CA|C|2111
4WPO|1|CA|G|2112
4WPO|1|CA|U|2113
4WPO|1|CA|A|2114
4WPO|1|CA|G|2115
4WPO|1|CA|G|2116
4WPO|1|CA|A|2117
4WPO|1|CA|U|2118
4WPO|1|CA|A|2119
4WPO|1|CA|G|2120
*
4WPO|1|CA|C|2178
4WPO|1|CA|C|2179

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L1

Chain DY

Transfer RNA; tRNA