IL_4WPO_281

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WPO|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_281 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0478

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WPO|1|CA|U|2636
4WPO|1|CA|U|2637
4WPO|1|CA|G|2638
4WPO|1|CA|A|2639
4WPO|1|CA|G|2640
*
4WPO|1|CA|C|2774
4WPO|1|CA|A|2775
4WPO|1|CA|A|2776
4WPO|1|CA|G|2777
4WPO|1|CA|A|2778
4WPO|1|CA|U|2779
4WPO|1|CA|G|2780
4WPO|1|CA|A|2781
4WPO|1|CA|G|2782

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L13