IL_4WPO_282

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_282 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0591

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WPO|1|CA|C|2652
4WPO|1|CA|U|2653
4WPO|1|CA|A|2654
4WPO|1|CA|G|2655
4WPO|1|CA|U|2656
4WPO|1|CA|A|2657
4WPO|1|CA|C|2658
*
4WPO|1|CA|G|2663
4WPO|1|CA|G|2664
4WPO|1|CA|A|2665
4WPO|1|CA|C|2666
4WPO|1|CA|C|2667
4WPO|1|CA|G|2668

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L6

Chain DZ

50S ribosomal protein L9,Elongation factor G