IL_4WPO_338

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4WPO|1|DA|C|1200, 4WPO|1|DA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_338 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.0968

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4WPO|1|DA|G|1057
4WPO|1|DA|G|1058
*
4WPO|1|DA|U|1199
4WPO|1|DA|C|1200
4WPO|1|DA|A|1201
4WPO|1|DA|G|1202
4WPO|1|DA|C|1203

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14 type Z