IL_4WQ1_021

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_021 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0938

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WQ1|1|13|G|450
4WQ1|1|13|A|451
4WQ1|1|13|A|452
4WQ1|1|13|A|453
4WQ1|1|13|C|454
4WQ1|1|13|C|455
*
4WQ1|1|13|G|477
4WQ1|1|13|A|478
4WQ1|1|13|C|479
4WQ1|1|13|U|480
4WQ1|1|13|G|481
4WQ1|1|13|A|482
4WQ1|1|13|C|483

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16