IL_4WQ1_042

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_042 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1916

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

4WQ1|1|13|U|999
4WQ1|1|13|A|1000
4WQ1|1|13|G|1001
*
4WQ1|1|13|C|1039
4WQ1|1|13|U|1040
4WQ1|1|13|A|1041

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA