IL_4WQ1_070

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4WQ1|1|14|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_070 not in the Motif Atlas

Homologous match to IL_4WF9_004

Geometric discrepancy: 0.1697

The information below is about IL_4WF9_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4WQ1|1|14|G|81
4WQ1|1|14|G|82
4WQ1|1|14|G|83
4WQ1|1|14|A|84
4WQ1|1|14|G|85
*
4WQ1|1|14|C|97
4WQ1|1|14|G|98
4WQ1|1|14|U|99
4WQ1|1|14|G|101
4WQ1|1|14|G|102
4WQ1|1|14|A|103
4WQ1|1|14|U|104
4WQ1|1|14|C|105

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L24

Chain G5

50S ribosomal protein L29