IL_4WQ1_080

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WQ1|1|14|U|504, 4WQ1|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_080 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0602

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WQ1|1|14|G|481
4WQ1|1|14|A|482
4WQ1|1|14|A|483
4WQ1|1|14|C|484
*
4WQ1|1|14|G|496
4WQ1|1|14|A|497
4WQ1|1|14|G|498
4WQ1|1|14|U|499
4WQ1|1|14|G|500
4WQ1|1|14|A|501
4WQ1|1|14|A|502
4WQ1|1|14|A|503
4WQ1|1|14|U|504
4WQ1|1|14|A|505
4WQ1|1|14|G|506
4WQ1|1|14|A|507
4WQ1|1|14|G|508
4WQ1|1|14|C|509

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24