IL_4WQ1_117

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_117 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1671

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WQ1|1|14|U|1357
4WQ1|1|14|G|1358
4WQ1|1|14|A|1359
4WQ1|1|14|A|1360
4WQ1|1|14|G|1361
*
4WQ1|1|14|C|1370
4WQ1|1|14|G|1371
4WQ1|1|14|U|1372
4WQ1|1|14|A|1373
4WQ1|1|14|G|1374

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain F5

50S ribosomal protein L28

Chain L5

50S ribosomal protein L34