IL_4WQ1_138

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_138 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1436

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4WQ1|1|14|U|1851
4WQ1|1|14|C|1852
4WQ1|1|14|A|1853
4WQ1|1|14|A|1854
4WQ1|1|14|G|1855
*
4WQ1|1|14|C|1887
4WQ1|1|14|G|1888
4WQ1|1|14|A|1889
4WQ1|1|14|A|1890
4WQ1|1|14|G|1891

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 3L

Transfer RNA; tRNA