IL_4WQ1_141

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WQ1|1|14|A|1938, 4WQ1|1|14|U|1944, 4WQ1|1|14|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_141 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1195

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4WQ1|1|14|C|1934
4WQ1|1|14|G|1935
4WQ1|1|14|A|1936
4WQ1|1|14|A|1937
4WQ1|1|14|A|1938
4WQ1|1|14|U|1939
4WQ1|1|14|U|1940
4WQ1|1|14|C|1941
4WQ1|1|14|C|1942
4WQ1|1|14|U|1943
4WQ1|1|14|U|1944
4WQ1|1|14|G|1945
*
4WQ1|1|14|C|1961
4WQ1|1|14|C|1962
4WQ1|1|14|U|1963
4WQ1|1|14|G|1964

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA