IL_4WQ1_164

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WQ1|1|14|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_164 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0662

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WQ1|1|14|U|2636
4WQ1|1|14|U|2637
4WQ1|1|14|G|2638
4WQ1|1|14|A|2639
4WQ1|1|14|G|2640
*
4WQ1|1|14|C|2774
4WQ1|1|14|A|2775
4WQ1|1|14|A|2776
4WQ1|1|14|G|2777
4WQ1|1|14|A|2778
4WQ1|1|14|U|2779
4WQ1|1|14|G|2780
4WQ1|1|14|A|2781
4WQ1|1|14|G|2782

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3