IL_4WQ1_167

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4WQ1|1|14|U|2689, 4WQ1|1|14|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_167 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0775

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4WQ1|1|14|U|2687
4WQ1|1|14|U|2688
4WQ1|1|14|U|2689
4WQ1|1|14|C|2690
4WQ1|1|14|C|2691
*
4WQ1|1|14|G|2718
4WQ1|1|14|G|2719
4WQ1|1|14|U|2720
4WQ1|1|14|A|2721
4WQ1|1|14|G|2722

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19