IL_4WQ1_277
3D structure
- PDB id
- 4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4WQ1|1|1H|A|1127, 4WQ1|1|1H|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WQ1_277 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0816
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4WQ1|1|1H|G|1024
4WQ1|1|1H|G|1025
4WQ1|1|1H|U|1026
4WQ1|1|1H|A|1027
4WQ1|1|1H|A|1028
4WQ1|1|1H|A|1029
4WQ1|1|1H|G|1030
*
4WQ1|1|1H|C|1124
4WQ1|1|1H|G|1125
4WQ1|1|1H|A|1126
4WQ1|1|1H|A|1127
4WQ1|1|1H|A|1128
4WQ1|1|1H|A|1129
4WQ1|1|1H|U|1130
4WQ1|1|1H|G|1131
4WQ1|1|1H|A|1132
4WQ1|1|1H|U|1133
4WQ1|1|1H|C|1135
4WQ1|1|1H|G|1136
4WQ1|1|1H|G|1137
4WQ1|1|1H|G|1138
4WQ1|1|1H|G|1139
4WQ1|1|1H|C|1140
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 21
- 50S ribosomal protein L3
- Chain 58
- 50S ribosomal protein L13
- Chain 88
- 50S ribosomal protein L16
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