IL_4WQ1_288

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4WQ1|1|1H|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_288 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0479

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WQ1|1|1H|C|1351
4WQ1|1|1H|U|1352
4WQ1|1|1H|A|1353
4WQ1|1|1H|A|1354
4WQ1|1|1H|G|1355
*
4WQ1|1|1H|C|1376
4WQ1|1|1H|G|1377
4WQ1|1|1H|A|1378
4WQ1|1|1H|A|1379
4WQ1|1|1H|G|1380

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34