IL_4WQ1_320

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_320 not in the Motif Atlas

Geometric match to IL_5VCI_001

Geometric discrepancy: 0.1594

The information below is about IL_5VCI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4WQ1|1|1H|C|2108
4WQ1|1|1H|U|2109
4WQ1|1|1H|G|2110
*
4WQ1|1|1H|C|2179
4WQ1|1|1H|U|2180
4WQ1|1|1H|G|2181

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA