IL_4WQ1_367

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WQ1|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_367 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1419

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WQ1|1|14|C|844
4WQ1|1|14|G|845
4WQ1|1|14|C|846
4WQ1|1|14|U|847
4WQ1|1|14|G|848
4WQ1|1|14|A|849
4WQ1|1|14|C|850
*
4WQ1|1|14|G|928
4WQ1|1|14|G|929
4WQ1|1|14|U|930
4WQ1|1|14|G|931
4WQ1|1|14|G|932
4WQ1|1|14|A|933
4WQ1|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30