IL_4WQ1_388

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4WQ1|1|14|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_388 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.4918

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4WQ1|1|14|C|1043
4WQ1|1|14|G|1044
4WQ1|1|14|A|1045
4WQ1|1|14|A|1046
4WQ1|1|14|G|1047
4WQ1|1|14|A|1048
4WQ1|1|14|C|1049
4WQ1|1|14|A|1050
4WQ1|1|14|G|1051
*
4WQ1|1|14|U|1108
4WQ1|1|14|C|1109
4WQ1|1|14|G|1110
4WQ1|1|14|A|1111
4WQ1|1|14|G|1112

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6