IL_4WQ1_389

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4WQ1|1|14|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_389 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.3954

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4WQ1|1|14|G|1059
4WQ1|1|14|U|1060
4WQ1|1|14|U|1061
4WQ1|1|14|G|1062
*
4WQ1|1|14|C|1076
4WQ1|1|14|A|1077
4WQ1|1|14|U|1078
4WQ1|1|14|C|1079

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 45

50S ribosomal protein L16