IL_4WQF_042

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4WQF|1|AA|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_042 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1861

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

4WQF|1|AA|G|1105
4WQF|1|AA|U|1106
4WQF|1|AA|U|1107
4WQF|1|AA|G|1108
*
4WQF|1|AA|C|1122
4WQF|1|AA|A|1123
4WQF|1|AA|U|1124
4WQF|1|AA|C|1125

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L11

Chain AQ

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L25