IL_4WQF_087

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4WQF|1|AA|G|2138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_087 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.2648

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4WQF|1|AA|G|2132
4WQF|1|AA|C|2133
4WQF|1|AA|G|2134
4WQF|1|AA|U|2135
4WQF|1|AA|A|2136
4WQF|1|AA|G|2137
4WQF|1|AA|G|2138
4WQF|1|AA|A|2139
4WQF|1|AA|U|2140
4WQF|1|AA|A|2141
4WQF|1|AA|G|2142
*
4WQF|1|AA|C|2200
4WQF|1|AA|C|2201

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BY

Transfer RNA; tRNA