IL_4WQF_169

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_169 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1793

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WQF|1|BA|G|1241
4WQF|1|BA|C|1242
4WQF|1|BA|C|1243
*
4WQF|1|BA|G|1294
4WQF|1|BA|G|1295
4WQF|1|BA|C|1296

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BM

30S ribosomal protein S13

Chain BU

30S ribosomal protein Thx