IL_4WQF_288

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_288 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQF|1|CA|C|2652
4WQF|1|CA|U|2653
4WQF|1|CA|A|2654
4WQF|1|CA|G|2655
4WQF|1|CA|U|2656
4WQF|1|CA|A|2657
4WQF|1|CA|C|2658
*
4WQF|1|CA|G|2663
4WQF|1|CA|G|2664
4WQF|1|CA|A|2665
4WQF|1|CA|C|2666
4WQF|1|CA|C|2667
4WQF|1|CA|G|2668

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L6

Chain DZ

50S ribosomal protein L9,Elongation factor G