IL_4WQF_379

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_379 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0748

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4WQF|1|BA|G|673
4WQF|1|BA|G|674
4WQF|1|BA|A|675
4WQF|1|BA|A|676
4WQF|1|BA|U|677
*
4WQF|1|BA|G|713
4WQF|1|BA|G|714
4WQF|1|BA|A|715
4WQF|1|BA|A|716
4WQF|1|BA|C|717

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BF

30S ribosomal protein S6

Chain BK

30S ribosomal protein S11

Chain BR

30S ribosomal protein S18