IL_4WQR_028

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCU,AGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_028 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.1844

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4WQR|1|13|C|589
4WQR|1|13|C|590
4WQR|1|13|U|591
*
4WQR|1|13|A|648
4WQR|1|13|G|649
4WQR|1|13|G|650

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 6I

30S ribosomal protein S15

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17