IL_4WQR_034

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4WQR|1|13|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_034 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1088

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4WQR|1|13|G|662
4WQR|1|13|A|663
4WQR|1|13|G|664
4WQR|1|13|A|665
4WQR|1|13|G|666
*
4WQR|1|13|U|740
4WQR|1|13|G|741
4WQR|1|13|G|742
4WQR|1|13|U|743

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 5E

30S ribosomal protein S6

Chain 6I

30S ribosomal protein S15

Chain 9I

30S ribosomal protein S18