IL_4WQR_129

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4WQR|1|14|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_129 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2807

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WQR|1|14|G|1526
4WQR|1|14|G|1527
4WQR|1|14|A|1528
4WQR|1|14|A|1529
4WQR|1|14|G|1530
*
4WQR|1|14|U|1541
4WQR|1|14|G|1542
4WQR|1|14|A|1543
4WQR|1|14|C|1544
4WQR|1|14|A|1545
4WQR|1|14|A|1545|||A
4WQR|1|14|C|1546

Current chains

Chain 14

23S ribosomal RNA

Nearby chains