IL_4WQR_150

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCC*GGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGCC,GGCG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_150 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.5087

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4WQR|1|14|C|2105
4WQR|1|14|G|2106
4WQR|1|14|C|2107
4WQR|1|14|C|2108
*
4WQR|1|14|G|2181
4WQR|1|14|G|2182
4WQR|1|14|C|2183
4WQR|1|14|G|2184

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 3L

Transfer RNA; tRNA