IL_4WQR_171

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_171 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1675

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WQR|1|14|C|2652
4WQR|1|14|U|2653
4WQR|1|14|A|2654
4WQR|1|14|G|2655
4WQR|1|14|U|2656
4WQR|1|14|A|2657
4WQR|1|14|C|2658
*
4WQR|1|14|G|2663
4WQR|1|14|G|2664
4WQR|1|14|A|2665
4WQR|1|14|C|2666
4WQR|1|14|C|2667
4WQR|1|14|G|2668

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6