IL_4WQR_205

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_205 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1063

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WQR|1|1G|G|450
4WQR|1|1G|A|451
4WQR|1|1G|A|452
4WQR|1|1G|A|453
4WQR|1|1G|C|454
4WQR|1|1G|C|455
*
4WQR|1|1G|G|477
4WQR|1|1G|A|478
4WQR|1|1G|C|479
4WQR|1|1G|U|480
4WQR|1|1G|G|481
4WQR|1|1G|A|482
4WQR|1|1G|C|483

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16