IL_4WQR_269

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WQR|1|1H|U|504, 4WQR|1|1H|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_269 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0572

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WQR|1|1H|G|481
4WQR|1|1H|A|482
4WQR|1|1H|A|483
4WQR|1|1H|C|484
*
4WQR|1|1H|G|496
4WQR|1|1H|A|497
4WQR|1|1H|G|498
4WQR|1|1H|U|499
4WQR|1|1H|G|500
4WQR|1|1H|A|501
4WQR|1|1H|A|502
4WQR|1|1H|A|503
4WQR|1|1H|U|504
4WQR|1|1H|A|505
4WQR|1|1H|G|506
4WQR|1|1H|A|507
4WQR|1|1H|G|508
4WQR|1|1H|C|509

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24